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Network motif
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#	Item
1	Network Motifs Concepts for Pattern Frequency Frequent Pattern Search Application on Biological Data Motif Analysis and Visualisation Add to Reading List Source URL: www.nettab.org Language: English - Date: 2004-10-11 17:33:54
2	Microsoft PowerPoint - 第8-4章-Network Motif.pptx Add to Reading List Source URL: bioinfo.ict.ac.cn - Date: 2014-11-28 11:09:46
3	32 COMPARATIVE ANALYSIS OF TOPOLOGICAL PATTERNS IN DIFFERENT MAMMALIAN NETWORKS BJOERN GOEMANN1 ANATOLIJ P. POTAPOV1 Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2009-12-21 01:55:58 Networks Graph theory Physics Mathematics Network theory Gene expression Biology Systems biology Network motif Gene regulatory network Centrality Biological network
4	Vol. 24 ECCB 2008, pages i160–i166 doi:bioinformatics/btn282 BIOINFORMATICS Efﬁcient representation and P-value computation for Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:22 Statistics Probability Machine learning Markov models Statistical models Bioinformatics Estimation theory Graph theory Markov chain Dynamic programming Bayesian network Sequence motif
5	SLS08_eurasip-revised.dvi Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:23 Graph theory Mathematics Discrete mathematics Probability distributions Networks Gene expression Network motif Tree Random graph Bipartite graph Poisson distribution Connectivity
6	LNBIReaction Motifs in Metabolic Networks Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:22 Graph theory Graph Matching Vertex Tree Bipartite graph Network motif Connectivity Clique Color-coding
7	Finding DNA Regulatory Motifs with Positiondependent Models HuihaiWu University of Surrey, Guildford, United Kingdom Email: Prudence W.H. Wong, Mark X. Caddick and Chris Sibthorp Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2013-07-03 10:32:55 Bioinformatics Position weight matrix Sequence motif Multiple sequence alignment DNA binding site Gibbs sampling Bayesian network Sequence alignment
8	A highly scalable algorithm for the extraction of cis-regulatory regions Alexandra M. Carvalho∗ INESC-ID Rua Alves Redol, Lisboa, Portugal Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:21 Gene expression Networks Bioinformatics Suffix tree Binary trees Tree traversal Gene regulatory network R-tree Rope Algorithm Planted motif search Tree alignment
9	Resource Circuitry and Dynamics of Human Transcription Factor Regulatory Networks Shane Neph,1,5 Andrew B. Stergachis,1,5 Alex Reynolds,1 Richard Sandstrom,1 Elhanan Borenstein,1,2,4,* Add to Reading List Source URL: elbo.gs.washington.edu Language: English - Date: 2012-09-14 16:40:38 Induced stem cells Transcription factors Gene expression Developmental biology Biotechnology Cellular differentiation Transdifferentiation Homeobox protein NANOG Stem cell Network motif SOX2 MyoD
10	Details of our Motif Clustering Procedure 1 Bayesian Hierarchical Clustering Model The data for each discovered motif is a count matrix Ni which can have different widths and number of counts compared to other TF motifs. Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2005-07-21 15:44:40 Hierarchical clustering Network analysis Cluster analysis Probability distributions

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